PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015892374.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SRS

Protein Properties

Length: 234aa MW: 25593.4 Da PI: 8.2848

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015892374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	178.3	3.4e-55	10	143	5	152
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 +++CqdCGnqakk+C+++RCRtCCk++gf C+thvkstWvpa++rr+r++q++ ++ + ++++kr+r++ ++q+ s XP_015892374.1 10 GSRCQDCGNQAKKECVYMRCRTCCKNKGFLCQTHVKSTWVPAYRRRQRHHQNHHH---HNLLQPHHNPKRHRQD--QQQQHPLS---------AG 90 679******************************************97766554...2222345566666665..23322222.........24 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 le +++P+ev+s+a f+cvrvssv+d+ +++aYqt+v+igGh+fkGiLydqG+ XP_015892374.1 91 LEEANFPPEVNSMATFHCVRVSSVEDSIDQYAYQTSVHIGGHIFKGILYDQGA 143 56678*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-55	10	143	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.5E-27	13	54	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.8E-24	96	142	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MIQGGGFMIG SRCQDCGNQA KKECVYMRCR TCCKNKGFLC QTHVKSTWVP AYRRRQRHHQ 60 NHHHHNLLQP HHNPKRHRQD QQQQHPLSAG LEEANFPPEV NSMATFHCVR VSSVEDSIDQ 120 YAYQTSVHIG GHIFKGILYD QGACDENCYT AAGESSSGTG GVLDQQPNFV NAVALTGSGT 180 TAARTSAVSA FASASASASG GGAHEQLQFI NASSYSFPLD ASFSGMQFFP NRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015892374.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892374.1	1e-177	protein SHI RELATED SEQUENCE 1
TrEMBL	A0A251MV94	1e-66	A0A251MV94_PRUPE; Uncharacterized protein
STRING	XP_008236969.1	4e-67	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-45	SHI-related sequence3