PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892617.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family RAV
Protein Properties Length: 349aa    MW: 39609.6 Da    PI: 6.2661
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-105299154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +++kGV   + +g W A+I+    n  r+r++lg+f +++eAa a+++a+ kl+
  XP_015892617.1 52 TKFKGVVLLR-NGHWGAQIYG---N--RQRIWLGTFKSEKEAAMAYDRAAIKLH 99
                    689***9887.8******766...3..6**********99************98 PP
2B380.51.7e-25174269183
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---.......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke.....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                     f+k+ltpsdv+k++rlv+pkk+a ++           +   +     + ++l++ d+  rsW+++++y+k+s+++vlt+GW+++v++++Lk++D+
  XP_015892617.1 174 FQKELTPSDVSKLNRLVIPKKYAIKYfpcitgiaeeeN---QvenmlGAVQLVFFDKMMRSWKFRYCYWKSSQSFVLTRGWSRYVREKQLKANDT 265
                     99****************************97766541...134455778899999999************************************ PP

                     EEEE CS
              B3  80 vvFk 83 
                     ++F 
  XP_015892617.1 266 ITFF 269
                     **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-1852110No hitNo description
PfamPF008479.2E-75299IPR001471AP2/ERF domain
PROSITE profilePS5103215.25153108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-1353105IPR001471AP2/ERF domain
SMARTSM003805.7E-1453114IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1453109IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.106.4E-30169275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-25172273IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-24172270No hitNo description
PfamPF023626.7E-23174269IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646174290IPR003340B3 DNA binding domain
SMARTSM010199.1E-18174281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEDLSSMVT NGVNVIAAEA SDSNSSAQDS NSSAHSFAFS NPVMHDYVVS STKFKGVVLL  60
RNGHWGAQIY GNRQRIWLGT FKSEKEAAMA YDRAAIKLHS GYSYRNIPWT RINIEETKFQ  120
NIYSAEAVVN MIKDGSYQAK FADYLRTSTR TVDTEVGFNL TRVQTRGVIC RHLFQKELTP  180
SDVSKLNRLV IPKKYAIKYF PCITGIAEEE NQVENMLGAV QLVFFDKMMR SWKFRYCYWK  240
SSQSFVLTRG WSRYVREKQL KANDTITFFM CECREGAREA QPFFMIDVNG GDGNSGLVEG  300
ANQNASKTIT NDDENGKELE DCEDLEMDTE PIQDSGITSF RLFGAHIII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-261722836107B3 domain-containing transcription factor NGA1
5os9_B6e-261722836107B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892617.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932645.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P57e-88RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2N9G0H71e-128A0A2N9G0H7_FAGSY; Uncharacterized protein
STRINGXP_006473975.11e-118(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.16e-90RAV family protein