PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015892868.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Protein Properties

Length: 226aa MW: 26148 Da PI: 9.1683

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015892868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51	2.6e-16	129	213	1	91
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k + +s+v+ +l lp +f+++h ++++ +++l de+ ++++ k+ +k++ l++GW++F +++L +gD +vF+l++ ++f+ XP_015892868.1 129 FVKPMFQSHVTGGFWLGLPVQFCKTHL--PHCNEMISLVDEDENEFQTKYLADKTG----LSGGWRGFSIEHQLVDGDALVFHLVRPTQFK 213 89*******************9996..458889***********666666....**********************9877774 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.73E-22	122	216	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.5E-18	123	215	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.43E-22	127	214	No hit	No description
Pfam	PF02362	4.5E-14	129	214	IPR003340	B3 DNA binding domain
SMART	SM01019	3.8E-18	129	221	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.742	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVESKLTYEE CRRQRLEENK KRMEELNLSK LAQSLKTSSP KSSPVKRVKP KPCLPVEPSS 60 LPLRRSSRVA DKPPSSYKEV PLEPLGRLRR SYQRRDLLNR QYASDEVRQY AIDRAEQIQS 120 GLDSDWPSFV KPMFQSHVTG GFWLGLPVQF CKTHLPHCNE MISLVDEDEN EFQTKYLADK 180 TGLSGGWRGF SIEHQLVDGD ALVFHLVRPT QFKVIYVFFI LFSCLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015892868.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892868.1	1e-167	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	5e-81	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2P5CQT2	1e-126	A0A2P5CQT2_TREOI; B3 DNA binding domain containing protein
STRING	XP_010107957.1	1e-113	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-78	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]