PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015892966.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 794aa MW: 90765.4 Da PI: 6.617

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015892966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100	2.5e-31	87	178	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ ++ eHnHel+p XP_015892966.1 87 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVP 178 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-29	87	178	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-33	299	391	IPR018289	MULE transposase domain
Pfam	PF04434	6.2E-13	567	613	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.251	579	615	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	590	617	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MDNEVIEFDI GLGGGGGGSG REGDDDIVDI EHTVDDEEMV DSPALTSGGS GGGGFGGGEI 60 YLPEGDLLDL EPYEGMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC 120 AKEGFRNLNE KRTKDREIKR PRTITRVGCK ASLSVKMQDS GKWIVSGFVR EHNHELVPPD 180 QVHCLRSHRQ ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN 240 RQRSLEGDIQ LLLDYLRQMH ADNPNFFYAV QGDEDQSTGN VFWADPKARM NYNYFGDTVT 300 FDTTYRSNRY RLPFAPFTGV NHHGQPVLFG CAFLINESEA SFVWLFKTWL MAMSGRPPVS 360 ITTDHDAVIR SAIMQVFPET RHRFCKWHIF KKCQEKLSHV FLKHPSFEAD FHKCVNLTES 420 IEEFESCWLS LVDRYDLRDH EWLQTIYSAR RQWVPVYLRD TFFAEMSITQ RSDSMNSYFD 480 GYVNASTNLS QFFKLYEKAL ESRNEKEVKA DYDTMNTSPV LKTPSPMEKQ ASELYTRKLF 540 MRFQEELVGT LTFMASKAED DGEIITYQVS KYGEDHKVYY VKFNVLEMKA TCSCQMFEFS 600 GLLCRHVLAV FRVTNVLTLP SHYILKRWTR NAKSSVILEE HRSDVYTNYL ESHTVRYNTL 660 RHEAFKYVDE GAKSAEMYDV ALGALQEAVN RVACATKNEG KTAMMNGRIR GSSSNNACQV 720 NNTCVDREGS SGQHMSEDDM DKKIRELTNE LECANRKCEV YRANLLSVLK DIEDHKLQLS 780 IKVQNIKISM KDGL

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MDNEVIEFDI GLGGGGGGSG REGDDDIVDI EHTVDDEEMV DSPALTSGGS GGGGFGGGEI  60
YLPEGDLLDL EPYEGMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC  120
AKEGFRNLNE KRTKDREIKR PRTITRVGCK ASLSVKMQDS GKWIVSGFVR EHNHELVPPD  180
QVHCLRSHRQ ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN  240
RQRSLEGDIQ LLLDYLRQMH ADNPNFFYAV QGDEDQSTGN VFWADPKARM NYNYFGDTVT  300
FDTTYRSNRY RLPFAPFTGV NHHGQPVLFG CAFLINESEA SFVWLFKTWL MAMSGRPPVS  360
ITTDHDAVIR SAIMQVFPET RHRFCKWHIF KKCQEKLSHV FLKHPSFEAD FHKCVNLTES  420
IEEFESCWLS LVDRYDLRDH EWLQTIYSAR RQWVPVYLRD TFFAEMSITQ RSDSMNSYFD  480
GYVNASTNLS QFFKLYEKAL ESRNEKEVKA DYDTMNTSPV LKTPSPMEKQ ASELYTRKLF  540
MRFQEELVGT LTFMASKAED DGEIITYQVS KYGEDHKVYY VKFNVLEMKA TCSCQMFEFS  600
GLLCRHVLAV FRVTNVLTLP SHYILKRWTR NAKSSVILEE HRSDVYTNYL ESHTVRYNTL  660
RHEAFKYVDE GAKSAEMYDV ALGALQEAVN RVACATKNEG KTAMMNGRIR GSSSNNACQV  720
NNTCVDREGS SGQHMSEDDM DKKIRELTNE LECANRKCEV YRANLLSVLK DIEDHKLQLS  780
IKVQNIKISM KDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015892966.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892966.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2C9UF08	0.0	A0A2C9UF08_MANES; Uncharacterized protein
STRING	EMJ02154	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]