PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893001.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 503aa    MW: 56033.2 Da    PI: 5.4915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30245304159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_015893001.1 245 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 304
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-32230306IPR003657WRKY domain
SuperFamilySSF1182909.55E-28238306IPR003657WRKY domain
PROSITE profilePS5081129.184240306IPR003657WRKY domain
SMARTSM007743.2E-37245305IPR003657WRKY domain
PfamPF031063.9E-27246304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGRENEKEMD IDLSLKFDSK EDQEEKEGKD KLEVEEDHEK EEEKQKVEPS EGNDEEQGAE  60
EEATAGEVVE DETSIVEVSF TETTKTEELY LLQTEMNRMK EENKVLRKVV EQTMKDYNDL  120
QMKFYSIQQN NKKKAPLLFL SLHGNNNAME EPKTTTISNV VEVNNHRSPS PPNQELGLSL  180
RLQTSTKKHE GKEDHKENSD ELPGYTAVQN KANRTEIEGI RSQVATPPNR KARVSVRARC  240
ETATMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVAPGCPVR KQVQRCLEDM SILITTYEGT  300
HNHPLPVGAT AMASTASAAA SFMLLDSSIN PHSQHETSNF TQSSLSYHTH HMMMTNPILS  360
HSPNFRSIIN PSNDPSKEIV LDLTNNNLYD PPQIPLASSS AQPAGFWMPP GKTNFHCGSN  420
IINHVLDSST RGLMDDKGWR SGEEKDSSMV ENVTAIASDP KFKVAVAAAI TSLITKENHT  480
SSHPVGSAFS QRHGEGGSSS NNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21232308176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893001.10.0probable WRKY transcription factor 9
SwissprotQ9C9F03e-80WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A2N9FLF71e-155A0A2N9FLF7_FAGSY; Uncharacterized protein
STRINGEMJ253501e-151(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-72WRKY DNA-binding protein 9