PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893146.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 594aa    MW: 67341.2 Da    PI: 4.9768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13361404755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +ErrRR+++N+++  Lr+l+P+ +      Kl+Ka+iL  A+e++k+Lq
  XP_015893146.1 361 VAERRRRKKLNERLYSLRSLVPNiS------KLDKASILGDAIEFVKELQ 404
                     58*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-2018168IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.72E-13347406No hitNo description
PROSITE profilePS5088816.59354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-18356421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10361404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-17361416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.8E-4483549No hitNo description
SuperFamilySSF550217.63E-5483550No hitNo description
PROSITE profilePS516718.573485563IPR002912ACT domain
CDDcd048738.29E-5486550No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MANRIRESLQ VNIIVQNLMD RLRPLVGLKG WDYCVLWKLS EDQRFIEWMN CCCGGTENIQ  60
NDGDQQPSFP VSPVLPCRDT MFQHPRTNSC DLLTQLPSSI PLDSGIYAQT LISNQHSWLT  120
LNPNSSDSID PEEPFLTKVL IPLPGGLIEL FASKQIPEDE HVMHYITSQC NIPVDHNSLT  180
SASNMDTTFT ANVNPMNEIQ PKPCNGSDEM DPSNHLHPPF SPSTAFDNLR LPYDISSVDR  240
IRPCSSPVNF LHQFSYNPEE RTKDDFFFEC SHDSLLSDKK NKCPGIQENE MEKSMMIDTP  300
NMHVQYSEPI DNKEKQGNEK DSIKQEGGRS DSLSDCSDQI DDEDDGKYRR RAGKGKCKNL  360
VAERRRRKKL NERLYSLRSL VPNISKLDKA SILGDAIEFV KELQKQAKEL QDELEVHSDN  420
NTSISGILIH SGANLGPKSD HDKAPNELHL EASGTRCNSE QNQDSDAQQM EPQVEVAQID  480
DNEFFVTVTC EHKPGGFVRL MEALNSLGLE VTNANVTTFR TLVSNVFKVE QKKDNEIVQA  540
DHVRDSLLDL TRNPLRDLSE MSKLSENVSG MDYQHQLHHF HIQHANSYPF HHLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348368RRRAGKGKCKNLVAERRRRKK
2362369ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932813.10.0transcription factor ABORTED MICROSPORES isoform X1
RefseqXP_024932814.10.0transcription factor ABORTED MICROSPORES isoform X1
TrEMBLA0A2P5EWP80.0A0A2P5EWP8_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010107648.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-131bHLH family protein