PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893295.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 340aa    MW: 38087.7 Da    PI: 8.3637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12165212355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  XP_015893295.1 165 QDHIVAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYMKHLQ 212
                     67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.917162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-17166228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-18166225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-13167216No hitNo description
SMARTSM003539.4E-15168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDIRGLPEMG MEDPSFINPW YMNSLDEISM LPLAAALGEN LQQSHSHLYS NFNLKASMDG  60
SHIGTVIDRP VKHHKPNSWN STKVDPISNP LVAYSPNFLS FVSSNYTNQM GLMKPKEEAV  120
CLKGSKNPPS DGLVSQGSYA NQDSALKANQ GAKRVCSSTR LPQTQDHIVA ERKRREKLSQ  180
RFIALSAIVP GLKKMDKASV LGDAIKYMKH LQEKVKTLEE QTRKENMESV VFVKKTQLFA  240
DGDNSSLDKN FCSGPFNEPL PEIEARFCDK NVLIRIHCEK RKGILEKTIA EMEKLHLTVT  300
NSSCLTFGSS VLDVTIIAKM NEEFSLTVQD LMLFSAKFYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14166215857Transcription factor MYC2
5gnj_B2e-14166215857Transcription factor MYC2
5gnj_E2e-14166215857Transcription factor MYC2
5gnj_F2e-14166215857Transcription factor MYC2
5gnj_G2e-14166215857Transcription factor MYC2
5gnj_I2e-14166215857Transcription factor MYC2
5gnj_M2e-14166215857Transcription factor MYC2
5gnj_N2e-14166215857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERKRRE
2171176RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893295.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893295.10.0transcription factor bHLH18-like
SwissprotQ9T0723e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P5ECZ51e-174A0A2P5ECZ5_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010107640.11e-157(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-63bHLH family protein