PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893562.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 210aa    MW: 22468.2 Da    PI: 9.8501
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893562.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17117152134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  XP_015893562.1 117 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWANKG 152
                     ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062033.9E-174587IPR010402CCT domain
PROSITE profilePS5101713.4734587IPR010402CCT domain
PROSITE profilePS501149.737111168IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-11111164IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-12113162No hitNo description
Gene3DG3DSA:3.30.50.109.2E-16116158IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440117144IPR000679Zinc finger, GATA-type
CDDcd002023.01E-15117166No hitNo description
PfamPF003205.6E-15117152IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSEVQAVLLL LGGYEIPSGI PAVGSVPLNQ RGINEFTGKP IQPQRAASLS RFREKRKERC  60
FDKKIRYSVR KEVALRMQRK KGQFVSSKVS SDEGSPSSVW NATQGSGQDE STQETLCTHC  120
GTSSKSTPMM RRGPAGPRTL CNACGLKWAN KGILRDLSKV SSTGIQDPSA KETEQSDGEA  180
NDSDAVTTTA DIVATNGDNS AMTAAAAAKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893562.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024933294.11e-152GATA transcription factor 24-like, partial
SwissprotQ8GXL74e-62GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2I4DVR11e-116A0A2I4DVR1_JUGRE; GATA transcription factor 24-like
STRINGXP_010112233.11e-116(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-65ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]