PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015893685.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 110aa MW: 12975.9 Da PI: 7.5814

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015893685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.1	3.7e-10	2	32	59	89
FAR1 59 rtgCkaklkvkkekdgkwevtkleleHnHel 89 r gCka++ vk +k+gkw +t++e++H+H+l XP_015893685.1 2 REGCKAMILVKVDKSGKWIITRFEKDHTHPL 32 789**************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-8	2	33	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MREGCKAMIL VKVDKSGKWI ITRFEKDHTH PLIVSERPSW NSVDTKDRRI QELTMELENQ 60 DQLCRLYREL LLSFLKNVEE QTEQLSMKVG GVLNNIREFE PGIQKLSHNH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015893685.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015893685.1	4e-77	uncharacterized protein LOC107427805
TrEMBL	A0A2P5CY21	1e-48	A0A2P5CY21_TREOI; FHY3/FAR1 family
STRING	cassava4.1_017467m	4e-39	(Manihot esculenta)
STRING	XP_009779434.1	8e-39	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-38	FAR1 family protein