PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015893698.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 255aa MW: 30033.6 Da PI: 6.426

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015893698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78	1.8e-24	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l+v +++ +kw+ tk+ +eHnH+l+ XP_015893698.1 78 EFYVVYGRRTGFNVRIHHNRRSRINNIVIGQDFVCSKEGYREKKYVYRKDR-VlpPPPITREGCPAMLRVALRDGEKWVATKFIKEHNHTLM 168 6****************************************99883333.234899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-22	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MESTSNQSFD SDDSDRCLQL ESYDEHVLVD DDVSKSINLC TEGDNKIKEQ SNDSLLIEGD 60 TIEPYIGMEF KSRDDAREFY VVYGRRTGFN VRIHHNRRSR INNIVIGQDF VCSKEGYREK 120 KYVYRKDRVL PPPPITREGC PAMLRVALRD GEKWVATKFI KEHNHTLMSP SKVPWRGCGK 180 NLISEDEKDR RIRELTLELS NERQRCRRRC AAYQERLHAV LKDIEQHTDH LSRRVQDIVQ 240 HIKEMENDQI EDSDY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015893698.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015893698.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_015893699.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P5DPC2	1e-150	A0A2P5DPC2_PARAD; FHY3/FAR1 family
STRING	XP_002527269.1	1e-140	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-28	FAR1 family protein