PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893770.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 156aa    MW: 18587.2 Da    PI: 9.9368
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.45.5e-2436123190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     ++Y++YA+++GFsvrk k ++  + g+i kr + Cskeg+r++++++++ ++  r etr+gCka+++++ e  gkw +++++l+HnH+l 
  XP_015893770.1  36 EYYKKYAQQIGFSVRKGKLNRL-EIGTIRKRYLFCSKEGFRSTKSSSNNIKKYWRRETRMGCKANIQLTVE-GGKWLISDVVLDHNHDLD 123
                     69******************99.6677********************999999*****************9.***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-2136123IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDYNPNWLLQ FRKGKFNLYL YQKKGMEFSS EKEAYEYYKK YAQQIGFSVR KGKLNRLEIG  60
TIRKRYLFCS KEGFRSTKSS SNNIKKYWRR ETRMGCKANI QLTVEGGKWL ISDVVLDHNH  120
DLDRLTIQWS LCSSVREENL FTGYNSKEPE PSTEHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443203.14e-33protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1XBC78e-32A0A2K1XBC7_POPTR; Uncharacterized protein
TrEMBLU7DWW69e-32U7DWW6_POPTR; Uncharacterized protein
STRINGPOPTR_0149s00230.11e-32(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-12FAR1 family protein