PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893832.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 251aa    MW: 28483.2 Da    PI: 9.3514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001794116223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++++L  H +  H
  XP_015893832.1  94 SCSVCSRVYPTSHLLSIHVSEaH 116
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.876691IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806891IPR007087Zinc finger, C2H2
SMARTSM003555.693116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095116IPR007087Zinc finger, C2H2
SMARTSM003550.063131156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAMDIEQGRL GFPYWKPIQR RFDPESPFFA SGNIERELLA KQVALDLSED EKHYLRNSLG  60
EDSRGVFCPI VGCGACLTSL EDFEDHYNAR HTASCSVCSR VYPTSHLLSI HVSEAHDSFF  120
QAKVARGYAM YECLVEGCGL KFKNYKGRQQ HLVDKHKFPT SFEFLKKTHP SKKQRQKNYR  180
RQAVHKKADA SSMEVENETI DGLVSAVSKL STSDSPSSIS FGRRHTRGLT YVPRAVQREK  240
KPDTTSAGTR R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177KKQRQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893832.10.0zinc finger protein 511
TrEMBLA0A498J1091e-149A0A498J109_MALDO; Uncharacterized protein
STRINGXP_008379104.11e-147(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-120zinc ion binding;nucleic acid binding;zinc ion binding