PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893941.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 173aa    MW: 19064.1 Da    PI: 8.4899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000223961123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C +C++ F ++  L  H++ H
  XP_015893941.1 39 FPCLYCPRKFYTSQALGGHQNAH 61
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.58E-63566No hitNo description
PROSITE profilePS5015710.5963966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MADNPTVYDF LNQLPSSSSK PTRKTSSQSH HPPTPSRLFP CLYCPRKFYT SQALGGHQNA  60
HKRERAAARR GYPAETHLAR LQPEPPVEQG AAHGRFLDQY WLDHSHSSVV HGTHPPFQYH  120
SQIMGSSSSA VPFGGGGLQC QYHQGGSTPD APYPTVDVGD RGNIDHLDLT LRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893941.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893941.11e-126zinc finger protein KNUCKLES
TrEMBLA0A2N9HGT83e-36A0A2N9HGT8_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15014811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.14e-18C2H2 family protein