PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893961.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 395aa    MW: 43980.1 Da    PI: 8.4648
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.14.9e-28309377570
             TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssa 70 
                     k rhski T++g+RdRRvRls+++a++f+d+ d+LGfd++sk++eWL+++a  a+ el+++   s+++a
  XP_015893961.1 309 KERHSKIWTAKGLRDRRVRLSVNTAIQFYDILDRLGFDQPSKAVEWLIRAASDAMHELPSLptcSFPDA 377
                     89*********************************************************9944433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522001.06E-3716169IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010424.28625166IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002556.9E-4526166IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015826.2E-4226191IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.9E-1926139IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525403.99E-5218350IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF036349.7E-30307389IPR005333Transcription factor, TCP
PROSITE profilePS5136926.885308366IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDEIVPLPFS SSSSSSSSST SRTIMKHDVF LSFRGEDTRN NFTGHLYYAL RHQGIRAFID  60
IQLEKGEAIS PSLSSAIQQS LISMVVFSEN YASSAWCLDE LVKIMECRES CRQLVWPIFF  120
NVEPSHVRNL TGSFGQALAI FEADSTGKYK EKLPKWKTVL NKAGNLSGWH IASCDGDESH  180
RVIQKVVEAS VCKLKPAVPL LMDMYPVGIR DRLQVVDLGS IINAGDYDLE MLDIYGIGGI  240
GKSSSAKAVL NKFANEFQSS NFLANSAETS KQYCGGLQFH RPKSGANQVF PRLNQSSRII  300
KVSRASSVKE RHSKIWTAKG LRDRRVRLSV NTAIQFYDIL DRLGFDQPSK AVEWLIRAAS  360
DAMHELPSLP TCSFPDATDQ LSDNKRPSVE LKLID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A8e-57191711148TIR-NB-LRR type resistance protein RPV1
5ku7_B8e-57191711148TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893961.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893961.10.0TMV resistance protein N-like
TrEMBLA0A2P6QWA85e-71A0A2P6QWA8_ROSCH; Putative TIR domain, winged helix-turn-helix DNA-binding domain-containing protein
STRINGEMJ020029e-68(Prunus persica)
STRINGXP_004296293.11e-67(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-33TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2