PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015893990.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 194aa MW: 22036.9 Da PI: 9.226

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015893990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.6e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ XP_015893990.1 19 PRLRWTPELHHCFVHAIERLGGHKKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-32	15	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.731	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-16	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MTSCGRNGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG HKKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRGDLGRQ DRNSTQQRKQ SFEENDDGCV DEVVNGVGFH QSSKPIRESD 120 SQLIYSTPLP SKRARIETTS SISESLQCSQ RICETVTNPY TFDDYLVAMG EHNKGIKEAP 180 HSTAFSLPQH LYNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015893990.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015893990.2	1e-146	transcription repressor KAN1-like, partial
Refseq	XP_015894296.1	1e-145	putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_024933893.1	1e-145	putative Myb family transcription factor At1g14600 isoform X2
Refseq	XP_024933894.1	1e-145	putative Myb family transcription factor At1g14600 isoform X3
TrEMBL	A0A2I4FAY6	1e-107	A0A2I4FAY6_JUGRE; myb family transcription factor PHL6-like
STRING	VIT_01s0137g00050.t01	2e-98	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-34	G2-like family protein