PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894174.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 309aa    MW: 33353.8 Da    PI: 6.9439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.5e-15230266135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_015894174.1 230 CRHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKGT 266
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.53286121IPR010399Tify domain
SMARTSM009792.8E-1186121IPR010399Tify domain
PfamPF062001.7E-1291120IPR010399Tify domain
PfamPF062033.6E-16154196IPR010402CCT domain
PROSITE profilePS5101713.245154196IPR010402CCT domain
PROSITE profilePS501149.236224285IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-14224277IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13225287No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15228271IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.75E-13229272No hitNo description
PROSITE patternPS003440230257IPR000679Zinc finger, GATA-type
PfamPF003201.9E-13230266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGIHGNDVG MHMSDAQQHQ VHLQYVQEHD HHGLHHLSNG TGVTDGNDDG RCGDGGAAGG  60
AEIVEADVPS DPRNLSDNRN ALVDHGGDSG DQLTLSFQGQ VYVFDSVSPE KVQAVLLLLG  120
GREVPPSMPA IPIAAQNNNR GLAGTPQRFS VPQRLASLLR FREKRKERNF DKKIRYTVRK  180
EVALRMQRNK GQFTSSKCNN DDSASAVTSW ASNEGWGQDG NGSQHQEIVC RHCGISEKCT  240
PMMRRGPEGP RTLCNACGLM WANKGTLRDL SKATSQTGQN TPISRNENGN AETNQMVLGT  300
SGNSGDSAS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894174.10.0GATA transcription factor 28 isoform X1
SwissprotQ8H1G01e-138GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A151RPA51e-158A0A151RPA5_CAJCA; GATA transcription factor 25
STRINGXP_007142122.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-130ZIM-LIKE 2