PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894305.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 25114.4 Da    PI: 9.0333
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.3e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks r+ tfskRr g++KKA ELS+LCd+ev+++ifss+gklye+ss
  XP_015894305.1  9 KRIEDKSSRYATFSKRRSGLMKKARELSILCDVEVSLVIFSSRGKLYEFSS 59
                    79***********************************************96 PP
2K-box61.63e-2182172999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +++ae+++ ++ +L    e Lq+ qR l G d+++ s+ +L qLe+q + +l+  R +K++l+++++++l +kek+l+een+ L+++++
  XP_015894305.1  82 RGTNNAENYDSDYVNLPPYPELLQTVQRCLEGPDIDQFSVSDLVQLEKQFDAALTLTRYRKTQLWMQSVSDLHEKEKMLKEENELLEREIA 172
                     668899*********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.543161IPR002100Transcription factor, MADS-box
CDDcd002654.20E-36271No hitNo description
SuperFamilySSF554551.96E-30280IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003198.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-1784171IPR002487Transcription factor, K-box
PROSITE profilePS5129710.98187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGRKKVEMKR IEDKSSRYAT FSKRRSGLMK KARELSILCD VEVSLVIFSS RGKLYEFSST  60
DCFGKVLERY QRRRDEDKKY SRGTNNAENY DSDYVNLPPY PELLQTVQRC LEGPDIDQFS  120
VSDLVQLEKQ FDAALTLTRY RKTQLWMQSV SDLHEKEKML KEENELLERE IAAMKKNVNG  180
SNKAIRFTNT GNNNNEDGDN NLIEHSQRAT LHLLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20170169MEF2C
5f28_B4e-20170169MEF2C
5f28_C4e-20170169MEF2C
5f28_D4e-20170169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894305.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894305.11e-159truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A061E4A03e-66A0A061E4A0_THECC; Flowering locus C, putative isoform 1
STRINGEOX997863e-66(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14472412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.41e-43MIKC_MADS family protein