PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894307.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 318aa    MW: 36187.7 Da    PI: 8.8677
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.6e-1551141286
        trihelix   2 WtkqevlaLiearremeerlrr.gk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt qe++ Li+a++ +eer  + ++       + + +W++v ++++++ + rs++qC+++w+nl ++ykk++e e++ +  s++  p + +le
  XP_015894307.1  51 WTIQETMILITAKKLDEERRIKpAStsldpttKGELRWKWVENYCWSHWCLRSSNQCNDRWDNLLRDYKKVREYESNAQ--SRTDLPSYWNLE 141
                     *************96666655422234555549999****************************************964..444588888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.20143115IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.6E-447116IPR009057Homeodomain-like
PfamPF138373.5E-1150141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSEPTTTAAA EHHPHHRPTI QPPHFSAAQG GPSTSTATLT PLVRDYKKGN WTIQETMILI  60
TAKKLDEERR IKPASTSLDP TTKGELRWKW VENYCWSHWC LRSSNQCNDR WDNLLRDYKK  120
VREYESNAQS RTDLPSYWNL EKHDRKLWNL PSNMALEVFQ ALNEVLQRKY STQTTALRVP  180
QTLSVSPSPA PLTAPPLLPA PMGSPPVASE RSESAGTERS EKHTESDDTK GKKHEKIGSS  240
MKRSASLLAK TLQNCEEKKE KRHREIMEVQ RRRLEIEEAQ NEVKQQGMVN LVTAMSNLSS  300
AIQSLISDPP HHDDQQPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894307.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2655721e-60KF265572.1 Ziziphus jujuba microsatellite SSR72 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894307.10.0trihelix transcription factor ASR3-like
TrEMBLA0A2N9EPS21e-108A0A2N9EPS2_FAGSY; Uncharacterized protein
STRINGXP_002521872.11e-105(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-41Trihelix family protein