PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015894425.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 405aa MW: 46834.2 Da PI: 6.6346

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015894425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.2	9.6e-28	90	172	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ s +++y++++e XP_015894425.1 90 WVQDETRSLIGLRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGG--SGSAKMSYYKEIE 172 ******************************************************************98..34558***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	9.68E-9	32	67	No hit	No description
PROSITE profile	PS50090	8.455	82	146	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.6E-4	83	148	IPR009057	Homeodomain-like
SMART	SM00717	0.0022	86	148	IPR001005	SANT/Myb domain
CDD	cd12203	1.78E-28	88	153	No hit	No description
Pfam	PF13837	2.8E-20	89	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MYLSEKPRPI DFYKEEGSRD MMIEVVSNGE IPQPHHHPQQ QTQQQQQQQH QQQQQQQQQQ 60 QQAHQHQMLL GDSSGEDHEV KAPKKRAETW VQDETRSLIG LRREMDGLFN TSKSNKHLWE 120 QISAKMREKG FDRSPTMCTD KWRNLLKEFK KAKHQDRGGS GSAKMSYYKE IEEILRERSK 180 TAQYKSPTPP KVDSYMQFSD KALEDTSISF GPVEAPWCAA SGRPTLNLER RLDHDGHPLA 240 ITTADAVAAS GVPPWNWRET PGNGGESQSY AGRVISVKWG DYTRRIGIDA TAEAIKDAIK 300 SAFGLRTRRA FWLEDEYQII RSLDRDMPLG NYILHVDEGL AIKVCLYDES DHIPVHTEEK 360 IFYTEDDYRD FLTRRAWTCL REFDGYRNID NMDDLRPGAI YRGVS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MYLSEKPRPI DFYKEEGSRD MMIEVVSNGE IPQPHHHPQQ QTQQQQQQQH QQQQQQQQQQ  60
QQAHQHQMLL GDSSGEDHEV KAPKKRAETW VQDETRSLIG LRREMDGLFN TSKSNKHLWE  120
QISAKMREKG FDRSPTMCTD KWRNLLKEFK KAKHQDRGGS GSAKMSYYKE IEEILRERSK  180
TAQYKSPTPP KVDSYMQFSD KALEDTSISF GPVEAPWCAA SGRPTLNLER RLDHDGHPLA  240
ITTADAVAAS GVPPWNWRET PGNGGESQSY AGRVISVKWG DYTRRIGIDA TAEAIKDAIK  300
SAFGLRTRRA FWLEDEYQII RSLDRDMPLG NYILHVDEGL AIKVCLYDES DHIPVHTEEK  360
IFYTEDDYRD FLTRRAWTCL REFDGYRNID NMDDLRPGAI YRGVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-49	84	170	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015894425.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894425.1	0.0	trihelix transcription factor GT-1 isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A314ZGR1	0.0	A0A314ZGR1_PRUYE; Trihelix transcription factor GT-1-like isoform X2
STRING	XP_008222025.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]