PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894427.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 356aa    MW: 41605.4 Da    PI: 6.6565
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.57.7e-2890172286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++    s +++y++++e
  XP_015894427.1  90 WVQDETRSLIGLRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGG--SGSAKMSYYKEIE 172
                     ********************************************************************98..34558*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819951.26E-83267No hitNo description
PROSITE profilePS500908.45582146IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-483148IPR009057Homeodomain-like
SMARTSM007170.002286148IPR001005SANT/Myb domain
CDDcd122034.69E-2888153No hitNo description
PfamPF138372.2E-2089174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEEGSRD MMIEVVSNGE IPQPHHHPQQ QTQQQQQQQH QQQQQQQQQQ  60
QQAHQHQMLL GDSSGEDHEV KAPKKRAETW VQDETRSLIG LRREMDGLFN TSKSNKHLWE  120
QISAKMREKG FDRSPTMCTD KWRNLLKEFK KAKHQDRGGS GSAKMSYYKE IEEILRERSK  180
TAQYKSPTPP KVDSYMQFSD KALEDTSISF GPVEGGESQS YAGRVISVKW GDYTRRIGID  240
ATAEAIKDAI KSAFGLRTRR AFWLEDEYQI IRSLDRDMPL GNYILHVDEG LAIKVCLYDE  300
SDHIPVHTEE KIFYTEDDYR DFLTRRAWTC LREFDGYRNI DNMDDLRPGA IYRGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A5e-5084170186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894426.10.0trihelix transcription factor GT-1 isoform X2
SwissprotQ9FX531e-163TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A0R0HLU20.0A0A0R0HLU2_SOYBN; Uncharacterized protein
TrEMBLA0A314ZGR10.0A0A314ZGR1_PRUYE; Trihelix transcription factor GT-1-like isoform X2
TrEMBLA0A445FMH60.0A0A445FMH6_GLYSO; Trihelix transcription factor GT-1 isoform B
STRINGXP_008222025.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.21e-170Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]