PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894517.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 256aa    MW: 29181.6 Da    PI: 6.3091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894517.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.8e-121461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l   +   G ++W+++++   ++R++k+c++rw +yl
   XP_015894517.1 14 KGSWTIEEDRKLTTFILNNGIHCWRLVPKLADLRRCGKSCRLRWMNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding48.42.2e-1568111247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + ++eE+ +l ++   lG++ W++Ia++++ gRt++++k++w+k 
   XP_015894517.1  68 EAISEEEEAKLTQLQSCLGNR-WSKIAAHFP-GRTDNEIKNHWNKI 111
                      5679*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.403961IPR017930Myb domain
SuperFamilySSF466892.32E-2611108IPR009057Homeodomain-like
SMARTSM007171.5E-71363IPR001005SANT/Myb domain
PfamPF002493.6E-101461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-191568IPR009057Homeodomain-like
CDDcd001673.59E-51661No hitNo description
PROSITE profilePS5129422.83662116IPR017930Myb domain
SMARTSM007172.2E-1466114IPR001005SANT/Myb domain
PfamPF002493.5E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2269114IPR009057Homeodomain-like
CDDcd001675.98E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRKPCCDKI GLKKGSWTIE EDRKLTTFIL NNGIHCWRLV PKLADLRRCG KSCRLRWMNY  60
LRPGLKREAI SEEEEAKLTQ LQSCLGNRWS KIAAHFPGRT DNEIKNHWNK IKKRVVVVYP  120
DDVEQSQKSI NNTLEHHVDQ EKTMEGKSKD DDGGGGNGDH HDMSNIIAEN NNGGDGNTNI  180
INMCGYSVSM SDNTSSVIFQ DEAQSQKSWS EIQVDYSSSS NTTTFPVQIP DSLSDKEFHY  240
WIENSLEPIL SWDNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121165108B-MYB
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894517.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894517.10.0transcription factor MYB20-like
SwissprotQ9C7U79e-55MYB20_ARATH; Transcription factor MYB20
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-61myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]