PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894690.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 321aa    MW: 36485 Da    PI: 4.6584
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-092632972155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp+++++  LA+ +gL+++q+ +WF N+R ++
  XP_015894690.1 263 KWPYPTESDKIALAETTGLDQKQINNWFINQRKRH 297
                     569*****************************885 PP
2ELK26.81.2e-09217238122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     +LK++Llr +++++++Lk EFs
  XP_015894690.1 217 DLKDRLLRRFGSHISTLKLEFS 238
                     69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-2177120IPR005540KNOX1
PfamPF037907.9E-2079114IPR005540KNOX1
SMARTSM012562.6E-26127178IPR005541KNOX2
PfamPF037912.7E-24131177IPR005541KNOX2
PfamPF037892.9E-7217238IPR005539ELK domain
PROSITE profilePS512139.446217237IPR005539ELK domain
SMARTSM011889.5E-5217238IPR005539ELK domain
PROSITE profilePS5007112.746237300IPR001356Homeobox domain
SuperFamilySSF466898.13E-20238312IPR009057Homeodomain-like
SMARTSM003893.6E-13239304IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-28242301IPR009057Homeodomain-like
CDDcd000863.35E-12249301No hitNo description
PfamPF059203.0E-17257296IPR008422Homeobox KN domain
PROSITE patternPS000270275298IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDEMYGFQST AEYADKALMS PENLMILPSE YQSLLSSAAF RDRVPMFGSD ELLSAASVIS  60
EAASIAPEFQ REEDVSSIIK AKIASHPSYP KLLEAYIDCQ KVGAPPEVAS LLEIRRENDL  120
SNKRDSISTC LGADPELDEF METYYDMLVK YKSDLARPFD EATTFLNKIE MQLSNLCNGV  180
SIRTTLSDEG GGASSDEEFS GGEVDVQESQ LRGEDRDLKD RLLRRFGSHI STLKLEFSKK  240
KKKGKLPKEA RQTLLDWWNV HYKWPYPTES DKIALAETTG LDQKQINNWF INQRKRHWKP  300
SENMQFDVMD GISGQFFTND H
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894690.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-152KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A061EE171e-177A0A061EE17_THECC; KNOTTED1-like homeobox gene 6
STRINGEOY005441e-178(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-124KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]