PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015894702.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

YABBY

Protein Properties

Length: 218aa MW: 24823.9 Da PI: 5.5553

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015894702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	211.4	3.1e-65	6	167	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 + f+ seq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCt llsvn++kas +lla+ s+ +++ee +++ +++ +++ XP_015894702.1 6 HFFDLSEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTGLLSVNMMKASfvplHLLASLSQ------------VEKKEEVYNMEEVEADNP 88 67999******************************************9998444444444443............334455556666666666 PP YABBY 93 stsvsseklsened.eevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + +s s+ne+ +++ v + v++PPekrqr+Psayn fi+eei+r+ka+nP+++h+eafs+aaknWahfP+i f+ XP_015894702.1 89 MDRRSPAICSDNEEgDNIVSVNHiVNKPPEKRQRAPSAYNHFIREEIRRLKAENPKMAHKEAFSTAAKNWAHFPPIEFK 167 6665555555544414444454459*************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-63	10	167	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	112	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-5	114	163	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSTLNHFFDL SEQICYVQCG FCTTILLVSV PCSSLSMVVT VRCGHCTGLL SVNMMKASFV 60 PLHLLASLSQ VEKKEEVYNM EEVEADNPMD RRSPAICSDN EEGDNIVSVN HIVNKPPEKR 120 QRAPSAYNHF IREEIRRLKA ENPKMAHKEA FSTAAKNWAH FPPIEFKGDG ESCSQREENL 180 ASWDSDVTVN EVHEEGNFFH ERKVQRNSEN EQRHPLSE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015894702.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894702.1	1e-163	axial regulator YABBY 4 isoform X1
Swissprot	Q9LDT3	1e-71	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	M5XQH8	1e-99	M5XQH8_PRUPE; Uncharacterized protein
STRING	EMJ27781	1e-100	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	5e-74	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]