PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894915.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21428.4 Da    PI: 9.7727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.4e-211659245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + enksn+qvtfskRr g++ KA ELSvLC+aeva i+fs++ k
  XP_015894915.1 16 KLENKSNKQVTFSKRRVGLFNKAGELSVLCGAEVAAIVFSPNSK 59
                    679*************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.53759IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-26773IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-22860IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-19929IPR002100Transcription factor, MADS-box
PfamPF003191.5E-201759IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MATKKTQGRQ KIEIKKLENK SNKQVTFSKR RVGLFNKAGE LSVLCGAEVA AIVFSPNSKR  60
RRQRPCIYST TSSNTNTSNS SEAAAAAMAS AAAAAAGREL VPVGEFNREY REAMKELEVE  120
KKRAEEVKLA AEEKKVAWSE RFWWEEETVD GMRLGELEQF MAALKEMRRE VVNRTEELMK  180
SCSAASNDAV LA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866170.11e-46agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-19AGAMOUS-like 62