PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895056.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 109aa    MW: 12626.3 Da    PI: 9.0266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-1211991094
                    HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94
                    +  ++r+++p +f + ++g  +++ ++ ++   +g ++++ l++r++ g+     ++ ++GW++Fvk+ng+ +gD+++F  d++ +ef  ++
  XP_015895056.1 11 TDYKSRFSVPTEFHSLINGC-HGGAEIAIRAyDTGFRYDFVLSVRNGAGQiyqkpVFQQRGWQKFVKENGVLTGDTITFWKDQQtEEF--MI 99
                    4445689******9777444.34557777776799*********999999777767777********************965543443..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.2342105IPR003340B3 DNA binding domain
CDDcd100171.41E-116100No hitNo description
Gene3DG3DSA:2.40.330.107.1E-9694IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-101098IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-91399IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAVLSKEVSE TDYKSRFSVP TEFHSLINGC HGGAEIAIRA YDTGFRYDFV LSVRNGAGQI  60
YQKPVFQQRG WQKFVKENGV LTGDTITFWK DQQTEEFMIR SVRPFKNYM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-