PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015895130.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 342aa MW: 38418.1 Da PI: 7.6857

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015895130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.8e-33	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl XP_015895130.1 15 KPRLKWTPELHQRFVEAVSQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.011	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-31	13	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-17	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-23	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-22	113	159	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MQNQNMNLVL STDAKPRLKW TPELHQRFVE AVSQLGGADK ATPKSLMRVM GIPGLTLYHL 60 KSHLQKYRLG KSQQSENCSD RKQEDFKEIQ DGDVHFNAEI NERTENQIND SLQIAQALQL 120 QMEVQRKLHE QIEVQRHLQL RIEAQGKYLQ SVLKKAQETL AGYNSSSMGV ELAKAELSQL 180 VSMVNSGLPS SSHSELTDRR GSSLKNLESK QMRGTICSME SSLTSSESSG RKEEDQPMDQ 240 NGEPHKSNMA SVELQLIEVH PEYKPWNNVP SNQASGRKRS GSTISDGICV EQPVPKRSPN 300 HRDKNTNHMR KSGFLETLDL NSQYQNDIDS GPKAIDLNCK GV

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MQNQNMNLVL STDAKPRLKW TPELHQRFVE AVSQLGGADK ATPKSLMRVM GIPGLTLYHL  60
KSHLQKYRLG KSQQSENCSD RKQEDFKEIQ DGDVHFNAEI NERTENQIND SLQIAQALQL  120
QMEVQRKLHE QIEVQRHLQL RIEAQGKYLQ SVLKKAQETL AGYNSSSMGV ELAKAELSQL  180
VSMVNSGLPS SSHSELTDRR GSSLKNLESK QMRGTICSME SSLTSSESSG RKEEDQPMDQ  240
NGEPHKSNMA SVELQLIEVH PEYKPWNNVP SNQASGRKRS GSTISDGICV EQPVPKRSPN  300
HRDKNTNHMR KSGFLETLDL NSQYQNDIDS GPKAIDLNCK GV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015895130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895130.1	0.0	myb family transcription factor PHL8 isoform X1
Swissprot	F4I274	4e-83	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A2P5AEU9	0.0	A0A2P5AEU9_TREOI; Octamer-binding transcription factor
STRING	XP_010108678.1	1e-176	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-84	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]