PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015895132.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 339aa MW: 38027.6 Da PI: 7.6859

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015895132.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.6e-33	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl XP_015895132.1 15 KPRLKWTPELHQRFVEAVSQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.011	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-31	13	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-17	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-23	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	7.0E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-22	110	156	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MQNQNMNLVL STDAKPRLKW TPELHQRFVE AVSQLGGADK ATPKSLMRVM GIPGLTLYHL 60 KSHLQKYRLG KSQQSENCSD RKQEEIQDGD VHFNAEINER TENQINDSLQ IAQALQLQME 120 VQRKLHEQIE VQRHLQLRIE AQGKYLQSVL KKAQETLAGY NSSSMGVELA KAELSQLVSM 180 VNSGLPSSSH SELTDRRGSS LKNLESKQMR GTICSMESSL TSSESSGRKE EDQPMDQNGE 240 PHKSNMASVE LQLIEVHPEY KPWNNVPSNQ ASGRKRSGST ISDGICVEQP VPKRSPNHRD 300 KNTNHMRKSG FLETLDLNSQ YQNDIDSGPK AIDLNCKGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015895132.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895132.1	0.0	myb family transcription factor PHL8 isoform X3
Swissprot	F4I274	4e-83	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A2P5AEU9	0.0	A0A2P5AEU9_TREOI; Octamer-binding transcription factor
STRING	XP_010108678.1	1e-172	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-84	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]