PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895205.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 157aa    MW: 17854.5 Da    PI: 9.327
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.3e-1334129196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f  ++++s+v   ++l lp +  ++   +++     tl   +g++W+ ++      + +++r + ++ W++Fv++n+Lk+gD +vF+l ++s+ +
  XP_015895205.1  34 FNVIMSKSHVKPICILALPLRIHSKLPCETTI---PTLLKYRGKTWKATYHGgnhhSPSPKR-LDSNSWRQFVSDNDLKVGDGCVFQLLHSSSSK 124
                     66789999***********9998777544444...488899*********546433444444.45689*******************88776666 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     lv++v
  XP_015895205.1 125 LVFRV 129
                     66654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-1628133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-1529133IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-1332133No hitNo description
PROSITE profilePS5086311.06834135IPR003340B3 DNA binding domain
PfamPF023624.7E-1134129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MNKTERNVRV DGEEEDCGRG DEEFWPLSEK KPFFNVIMSK SHVKPICILA LPLRIHSKLP  60
CETTIPTLLK YRGKTWKATY HGGNHHSPSP KRLDSNSWRQ FVSDNDLKVG DGCVFQLLHS  120
SSSKLVFRVQ ILRGDIPSAF LRRTSGETAH TPILLLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895205.11e-114B3 domain-containing protein Os04g0386900-like
TrEMBLA0A251QDS64e-42A0A251QDS6_PRUPE; Uncharacterized protein
TrEMBLM5X8614e-42M5X861_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ221397e-43(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-09B3 family protein