PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015895230.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 302aa MW: 33318.2 Da PI: 7.1975

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015895230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47	4.6e-15	15	64	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY++ Lq XP_015895230.1 15 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLVEVIEYVQVLQ 64 899***********************9....8***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-18	11	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-21	12	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	13	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.64E-14	15	68	No hit	No description
Pfam	PF00010	1.8E-12	15	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-10	19	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MESDGKNNDK ASAIRSKHSV TEQRRRSKIN ERFQILRDLI PHSDQKRDTA SFLVEVIEYV 60 QVLQEKLQKY EGSYQGWSPE PTKLMPWRNS HWRVQSYIGS PQGIKNGSGP GSNFPGKFDE 120 NSISINPTML PSTQNPVESD PSRDVPCKAM DRHPEIANKG IPLPMPLQAS MSAPMRSDGV 180 LAHSLQGPVS DAQSMQCPCT SDTINQQEEL MIEGGTISIS SAYSQVLLNN LAQALQSAGV 240 DLSQASISVQ IDLGKRANRG LSSRMPISKE YENPTSSNQT MAHHKDTGNG EDSDQAQKRL 300 KT

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015895230.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895230.2	0.0	transcription factor BIM2
Swissprot	Q9CAA4	1e-109	BIM2_ARATH; Transcription factor BIM2
TrEMBL	M5XCV5	1e-171	M5XCV5_PRUPE; Uncharacterized protein
STRING	EMJ23764	1e-172	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-105	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]