PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895269.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 564aa    MW: 60554.5 Da    PI: 6.2065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09380428355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  XP_015895269.1 380 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 428
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-16375446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212377427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16380444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6380428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-11381432No hitNo description
SMARTSM003537.7E-10383433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDMGDRDKFE LENKNEDPMN YSPGMSSDWR FGGSNLTNTS MGLVSVGNSM AVSKGDLIGS  60
SCSSASMMDS FGPTLWEQPT NSQSLGFCEM NVPYFHIVIH LLGIRKGSPG SWRNGTDRAL  120
DMYWNPPNSM SKGGMFLPNV PGVLPQSLSQ LPADSAFIER AARFSCFNGG NFGDMVNSFA  180
IPESMGIYSR GGGMMHGAQD ILGGNGLKPV SGLQSQKNEL SVGEASKDAS LTVEHGPTDG  240
APLKNERKSE SLVRSHDEAK QGVGNGGSGN ESDEAEFSGG GQEEPSMLEG HGGEPSAKGL  300
GSKKRKRNGQ DMDLDQAKGA SQQPGESAKD NTEFQHKGDQ NHGTATNKAT GKHSKQGSQA  360
SDPPKEEYIH VRARRGHATN SHSLAERVRR EKISERMKFL QDLVPGCSKV TGKAVMLDEI  420
INYVQSLQRQ VEFLSMKLAT VNPRLDFNIE GLLAKDILQS RVGPSSTLAF SPEMPMSYPS  480
LHPSQQGLIQ AGHPGIGSSS DVLRRTISSQ LTPLTGGFKE PNQLPNVWED ELNNVVQMSF  540
GTSAPPSSHD VDGSLPAGHM KVEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895269.10.0transcription factor bHLH49 isoform X1
RefseqXP_024934325.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A2P5DTY30.0A0A2P5DTY3_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010091656.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-133bHLH family protein