PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895488.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 227aa    MW: 25223.7 Da    PI: 9.3947
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-1978132256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Lee F+++++++ +++e LA +l+L+ rqV vWFqNrRa+ k
  XP_015895488.1  78 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALALQLKLKPRQVEVWFQNRRARSK 132
                     78889************************************************98 PP
2HD-ZIP_I/II117.76.7e-3878166189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  XP_015895488.1  78 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALALQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRRLQREVEELRA 166
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.96E-1967135IPR009057Homeodomain-like
PROSITE profilePS5007116.92574134IPR001356Homeobox domain
SMARTSM003892.3E-1776138IPR001356Homeobox domain
CDDcd000865.79E-1777135No hitNo description
Gene3DG3DSA:1.10.10.608.0E-1878132IPR009057Homeodomain-like
PfamPF000461.6E-1678132IPR001356Homeobox domain
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
SMARTSM003405.2E-21134177IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-9134168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAVSRTSSSS LELTISVPGF SPSPSLPSSG RNLDINQVPT TGGEADHEEW MRAGSMELED  60
EEICIINGSS AASGGPPRKK LRLTKEQSRL LEESFRQHHT LNPKQKEALA LQLKLKPRQV  120
EVWFQNRRAR SKLKQTEMEC EYLKRWFGSL SEQNRRLQRE VEELRAMKVG PPTVISPHSC  180
EPLPASTLTM CPRCERVTTT ATTTTIDKGP TKNTAATLSS KVPTPAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895488.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895488.11e-166homeobox-leucine zipper protein HOX3
SwissprotQ0JKX12e-80HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-80HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1Q3BH861e-112A0A1Q3BH86_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein
STRINGcassava4.1_022041m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-60homeobox-leucine zipper protein 17