PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895612.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 469aa    MW: 51919.6 Da    PI: 5.5866
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.48e-101659340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+++ +k+++++C  ++ +lC+ C ++ H+       H++v
  XP_015895612.1 16 ARACDNCVKKRARWYCAADDAFLCQACDSSVHSAnslarrHERV 59
                    578*****************************657788888876 PP
2CCT64.92.4e-22411454144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +A++RpR+KGrFvk+a
  XP_015895612.1 411 REARVSRYREKRRTRLFSKKIRYEVRKMNAKKRPRMKGRFVKRA 454
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.0921461IPR000315B-box-type zinc finger
SMARTSM003361.5E-101461IPR000315B-box-type zinc finger
PfamPF006433.5E-81659IPR000315B-box-type zinc finger
CDDcd000215.92E-111761No hitNo description
PfamPF062037.8E-17411453IPR010402CCT domain
PROSITE profilePS5101715.825411453IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MISSKKVTNA VGGKTARACD NCVKKRARWY CAADDAFLCQ ACDSSVHSAN SLARRHERVR  60
LKTSSSLKPI VVDSLDGGAL LENSSPPWQR GVTRKARTPR NGKSVINHHN KSSKSREKSA  120
NNLFSLVPEV GGDETSHEEN EEEQLLYRVP IFDPLVTVAC DVETNTGSDG IESKANNISV  180
TPNNDNCISS GHEGENSHGF LPSEMDLEEF AADVESLLGK GLENECFGME ELGLVDCCKE  240
KETTTSESSG KVLVVKVEAE EEEQEDGSKE GDETEIDMMR EPFELNFEDY DSPASNCSDE  300
DGKVDVGIEL KMKNINGSGG ENDDEDEKKG KNNDKNEKRK ILLKLDYEAV LTAWSSSQRS  360
PWTTGDRPEL DTVDCWPEYM GICGGEIHQH HHAYGDMSGI GGNSAMANGG REARVSRYRE  420
KRRTRLFSKK IRYEVRKMNA KKRPRMKGRF VKRASFASGS SPAFPRSAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183352e-39JQ618335.1 Gossypium hirsutum constans-like protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895612.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2I4F1131e-168A0A2I4F113_JUGRE; zinc finger protein CONSTANS-LIKE 16-like
STRINGVIT_01s0011g03520.t011e-164(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-95B-box type zinc finger protein with CCT domain