PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895640.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 311aa    MW: 35286.6 Da    PI: 8.0076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-182168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W+  a++ g++Rt+k+c++rw++yl
   XP_015895640.1 21 RGPWTLEEDTLLIHYIASHGEGHWNMLAKYAGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1674117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_015895640.1  74 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1651668IPR017930Myb domain
SuperFamilySSF466894.79E-3119115IPR009057Homeodomain-like
SMARTSM007173.8E-152070IPR001005SANT/Myb domain
PfamPF002493.3E-162168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-232275IPR009057Homeodomain-like
CDDcd001678.06E-122368No hitNo description
PROSITE profilePS5129425.75169123IPR017930Myb domain
SMARTSM007172.7E-1573121IPR001005SANT/Myb domain
PfamPF002491.1E-1574117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2376122IPR009057Homeodomain-like
CDDcd001678.14E-1278117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPTIRKRVCN PINEEEIELR RGPWTLEEDT LLIHYIASHG EGHWNMLAKY AGLKRTGKSC  60
RLRWLNYLKP DIKRGNLTPQ EQLLILELHS KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KQARQLNIES NSKTFLDAVR YFWMPRLIQK MEQTSSSSSS SPLINTHNSS SAPSPLPNSN  180
KIASSSLPSS CPLPSKLTNT ANHSNGYLSS ITNPPCVFPS DSIIPHLPQL PQYPTSPPDH  240
EFGKTAYNTN SIQNNSRFAI SSSYDMEGGL NLVENNSGTE AFDISQFDTQ MAASDWVLDN  300
MADTLWNMEE I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25181234108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895640.10.0transcription factor MYB62
TrEMBLA0A314YF021e-131A0A314YF02_PRUYE; Transcription factor MYB21
STRINGEMJ243751e-131(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-85myb domain protein 62