PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895685.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 375aa    MW: 42167.4 Da    PI: 6.6763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14180226354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  XP_015895685.1 180 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 226
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-12180226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14181242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14181233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-5190229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMCGKKEDEA AAAECSQTIQ SFQEQQFLLH QHHQQQMHQN HQHHQQHQQQ QHQLIFPEVP  60
PILQPWSIPP VHSFNPAHFV STNPVHHRDH HHDPFLVPPP PVPVPSYAAS LFNRRPPSLQ  120
FTYDGSSTSD HLRIISDTLG PVVHHQQTGS AAAVPFGLQA ELGKMTAQEI MDAKALAASK  180
SHSEAERRRR ERINNHLAKL RSLLPSTTKT DKASLLAEVI QHVKELKRQT SLIAETSPVP  240
TEMDELIVDE EASEEDGRFI IKASLCCEDR SDLLPDLIKT LKAMRLKTLK AEITTLGGRV  300
KNVLFITGDQ EDSSCGEEQD HDQPHQQQSQ YCISSIQEAL KAVMEKTGGD ESSTGSVKRQ  360
RTNNINILEQ QHRSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895685.20.0transcription factor bHLH30
SwissprotQ9S7Y11e-104BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A067KC071e-160A0A067KC07_JATCU; Uncharacterized protein
STRINGPOPTR_0008s11490.11e-159(Populus trichocarpa)
STRINGcassava4.1_010668m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]