PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895746.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 511aa    MW: 57864.2 Da    PI: 7.0464
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP154.46.9e-481252692135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnss 86 
                     +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikel ++          + +s+s +++ s+        
  XP_015895746.1 125 TGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFLKSKSAIKELKENvvpptpqgkqNCQSSSTTSEISE-------- 211
                     79**************************************************************66554433221111111133333........ PP

             TCP  87 sg.........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                                +aa + + ++k+++k+++   ++ kesr+kar+rarertrekm+i+++
  XP_015895746.1 212 -VlsartieiiDAADDREeNGKEKKKRKKLCYKVGKESREKARERARERTREKMKIRSE 269
                     .144455557755555555888888888888*************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-44125265IPR005333Transcription factor, TCP
PROSITE profilePS5136937.245127185IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.072246263IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MFPNSSNVYN PFPNIINSNH HSNITPESNF SMTCTSDHGN AINFHTLIDH HQHEYDDYDD  60
GLLLSHLLSQ QQLLLSPQPD HQIEEDHSFN ISKDQLEADA NTKGFSMMMK KKTSKSEGQS  120
RRKRTGKKDR HSKICTAQGP RDRRMRLSLQ IARKFFDLQD MLGFDKASKT IEWLFLKSKS  180
AIKELKENVV PPTPQGKQNC QSSSTTSEIS EVLSARTIEI IDAADDREEN GKEKKKRKKL  240
CYKVGKESRE KARERARERT REKMKIRSEN GGIERSKEMN HRHYDNSLKM VCEAHHDQDQ  300
PVNIDELAAV GDDDKVHVMN YPNCCVQGDL MRGSSRSRSS SSVICDYLQE IGVTSSGGAN  360
SEEDFLGNFP GNWDTSNAKT QSFSCTITNA KRFTAAAAAA GGNQLCCPIY STNFSDIQEE  420
KPSNNYSIVF PNPCSIFVNQ SDHHIQTQEQ NPNFDNTSPI FLTGLIAQDQ QQNHPSSNLL  480
TNSNILWQSQ ILENQYFSCN PIISNKNHIS Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109123KKKTSKSEGQSRRKR
2232239EKKKRKKL
3234238KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895746.10.0uncharacterized protein LOC107429548
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-34TCP domain protein 12