PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015895940.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 351aa MW: 38364.6 Da PI: 6.0318

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015895940.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.8	1.1e-26	45	139	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e++ rr + + +p+W++vs++++ +g++r+p+qC+++w+nl+++ykkike+e++r+++++s +++ ++l+ XP_015895940.1 45 RWTRQEILVLIQGKRVAETKNRRIRtsgaafgsgQVEPKWASVSSYCKMHGVNRGPVQCRKRWSNLAGDYKKIKEWESQRKDGNESFWVMRNDLR 139 8************9999888743335566666*****************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-5	45	110	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	45	111	IPR017877	Myb-like domain
Pfam	PF13837	1.3E-12	45	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MAFEQVSLPT NPVDGETDGV TNGVEARPAS TDGGDDGSKT PRLPRWTRQE ILVLIQGKRV 60 AETKNRRIRT SGAAFGSGQV EPKWASVSSY CKMHGVNRGP VQCRKRWSNL AGDYKKIKEW 120 ESQRKDGNES FWVMRNDLRR ERKLPGFFDK EVYDILDAGS GGAPHTTLHP PAPPSEEKDG 180 TADEVEETGA MFDSGRGATA DDGLFSDFEQ DESGRSPEKE AAAKEGPGIA MGVPAVPISE 240 KQGQPVLRGC HGQGQGASNE KQPAPNPEIG STSKDVRKRK RFAFDGGDDE TSLQNQLIDV 300 FERNGKLLAA RLDAQNSHFE LDREQRKDHT ASVVAVLNKL ADALVRIAEK L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MAFEQVSLPT NPVDGETDGV TNGVEARPAS TDGGDDGSKT PRLPRWTRQE ILVLIQGKRV  60
AETKNRRIRT SGAAFGSGQV EPKWASVSSY CKMHGVNRGP VQCRKRWSNL AGDYKKIKEW  120
ESQRKDGNES FWVMRNDLRR ERKLPGFFDK EVYDILDAGS GGAPHTTLHP PAPPSEEKDG  180
TADEVEETGA MFDSGRGATA DDGLFSDFEQ DESGRSPEKE AAAKEGPGIA MGVPAVPISE  240
KQGQPVLRGC HGQGQGASNE KQPAPNPEIG STSKDVRKRK RFAFDGGDDE TSLQNQLIDV  300
FERNGKLLAA RLDAQNSHFE LDREQRKDHT ASVVAVLNKL ADALVRIAEK L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	279	KDVRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015895940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895940.1	0.0	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-117	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2P5F1X8	0.0	A0A2P5F1X8_TREOI; Homeodomain-like
STRING	XP_006487537.1	1e-157	(Citrus sinensis)
STRING	XP_006420771.1	1e-157	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-116	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]