PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896116.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 600aa    MW: 68383.2 Da    PI: 7.598
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-09496540247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + WT+eE+++++d v+ + +  W+ + + ++ ++t++ ++s+++++
   XP_015896116.1 496 LQWTAEEEKRFKDIVRSHNKCFWDDVVKWFP-TKTREKLVSYYFNV 540
                      57*****************************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010142.3E-942134No hitNo description
PROSITE profilePS5101117.90845138IPR001606ARID DNA-binding domain
SMARTSM005018.2E-1246139IPR001606ARID DNA-binding domain
SuperFamilySSF467743.27E-1546140IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.602.3E-1448143IPR001606ARID DNA-binding domain
PfamPF013888.0E-1163131IPR001606ARID DNA-binding domain
SuperFamilySSF466891.5E-5497543IPR009057Homeodomain-like
PfamPF002494.4E-7497540IPR001005SANT/Myb domain
CDDcd001671.35E-5498541No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAGWSILTSR TVLDCDENVV SCRNNGSCKS VEDGVDDDNC DGYKVRPRCI FDQVLSLFLK  60
EVAEKGVLRP VPAMLGGGQQ VDLFKLFRTV RDRGGHDRVS KKKLWASVAK KSGLSLGASA  120
AVKLIYFKYV NELVKWFRGM RKDRSLGNEQ YGFDKNVQFL SLELETEFRG LLSNGSVRKG  180
KNGGPIQLES DNEDSYRTSS GFGKYHSDND EKSRHDDDGD LQILDLNVDK KGKEWKRKRE  240
SLSGMLKWLI QTAKRSDDPS IGMIPEPSKW KDHKDNEFWL QAIRVREALF LRRHICSNTE  300
ESPLPKKQKM HPSMYEDNMA SSHHSTERLR CSERVPNLVK SRLCACCNSR SSSQSKLRSP  360
HKLELGKDPK EEAPAEVDLS VTDTEVSPPK DEPLEKHVSV GPLFQADVPE WTGVVAESDP  420
KWLGMQVWPV DCGAYKSYVE TDSIGQGRSD FCGCPLRGSV ECVRFHIAEA KMKLKLQLGS  480
VFYHWRFDRM GEEVSLQWTA EEEKRFKDIV RSHNKCFWDD VVKWFPTKTR EKLVSYYFNV  540
FLIQRRSYQN RVTPKNIDSD DDETELGSLS EGFGHDAVKV SGSNSLSCSK NEQCFDFEQT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896116.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896116.10.0AT-rich interactive domain-containing protein 2
RefseqXP_024935075.10.0AT-rich interactive domain-containing protein 2
TrEMBLM5W8M50.0M5W8M5_PRUPE; Uncharacterized protein
STRINGXP_008238928.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF399678