PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896308.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 716aa    MW: 79104.9 Da    PI: 5.6096
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.94.3e-3162146187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  XP_015896308.1  62 RWPRQETLALLKIRSDMDASFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFTQLEA 146
                     8*********************************************************************866665..*******85 PP
2trihelix107.11.2e-33449534187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r  +e+r+++   k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kkike++kkr +++s+tcpyf+ql+a
  XP_015896308.1 449 RWPKAEVVALINLRGGLESRYQEVGPKGPLWEEISSGMQRMGYKRSAKRCKEKWENINKYFKKIKESNKKR-PDDSKTCPYFHQLDA 534
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0159121IPR001005SANT/Myb domain
CDDcd122038.98E-2761126No hitNo description
PROSITE profilePS500906.59761119IPR017877Myb-like domain
PfamPF138371.8E-2161147No hitNo description
PROSITE profilePS500906.562442506IPR017877Myb-like domain
SMARTSM007170.076446508IPR001005SANT/Myb domain
CDDcd122032.45E-29448513No hitNo description
PfamPF138372.2E-23448535No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MQEGEAVGGE QGQQLIEEAS PISSRPPASA SVNLDEFMGL SDGGGGGAGG GGGGGGGSSG  60
NRWPRQETLA LLKIRSDMDA SFRDATLKGP LWEDVSRKLA ELGYKRSAKK CKEKFENVHK  120
YYKRTKEGRA GRQDGKSYKF FTQLEALHSA TTQTANQFVA AVNPMPISSF RVSPSLSTTP  180
SKLPSASTSM PMIPPLDMTK PATHANMTAS TAGIFPTGVI SFSSNSSSSS PSSQDDDDNE  240
DDDLEGEPSN ISRKRKRESW KESSHRMMEF FENLMKQVMQ KQEAMQQKFL EIIEKREEDR  300
MIREEAWKRQ EMTRLSREHE LMAQERAISA SRDAAIISFL QKITGQIIQL PPPAGNNIHH  360
PAPPASAPPP PPPAVPSLTQ QQQQQDKQKH KDQSQCTQQQ QQQQPSAYTD QIAVVVNAEQ  420
HATPQLEFTG GSRINTTTTT TLEATSSSRW PKAEVVALIN LRGGLESRYQ EVGPKGPLWE  480
EISSGMQRMG YKRSAKRCKE KWENINKYFK KIKESNKKRP DDSKTCPYFH QLDALHLKKV  540
NIIGSSSAHA GEQHSISAAK QSQDKGDAET SMAAPNQQPE LVRESENKTA ATTDRVEITS  600
SLGLPSSFFG EGTVVQGASE KPEDIVKELM EQQENHRQQP PVKQQLIVDD YDKIEEPDSE  660
DIEQEDEDED EDDNEELEDH GKKMAYKIEL IQRQKATGTS VTGGGNGAPS FLAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896308.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLM5WE170.0M5WE17_PRUPE; Uncharacterized protein
STRINGEMJ115460.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-45Trihelix family protein