PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896310.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 624aa    MW: 68608.7 Da    PI: 8.7761
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.23.5e-3162146187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  XP_015896310.1  62 RWPRQETLALLKIRSDMDASFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFTQLEA 146
                     8*********************************************************************866665..*******85 PP
2trihelix107.31e-33449534187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r  +e+r+++   k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kkike++kkr +++s+tcpyf+ql+a
  XP_015896310.1 449 RWPKAEVVALINLRGGLESRYQEVGPKGPLWEEISSGMQRMGYKRSAKRCKEKWENINKYFKKIKESNKKR-PDDSKTCPYFHQLDA 534
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0159121IPR001005SANT/Myb domain
CDDcd122031.34E-2661126No hitNo description
PfamPF138371.5E-2161147No hitNo description
PROSITE profilePS500906.59761119IPR017877Myb-like domain
PROSITE profilePS500906.562442506IPR017877Myb-like domain
SMARTSM007170.076446508IPR001005SANT/Myb domain
PfamPF138371.8E-23448535No hitNo description
CDDcd122033.52E-29448513No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MQEGEAVGGE QGQQLIEEAS PISSRPPASA SVNLDEFMGL SDGGGGGAGG GGGGGGGSSG  60
NRWPRQETLA LLKIRSDMDA SFRDATLKGP LWEDVSRKLA ELGYKRSAKK CKEKFENVHK  120
YYKRTKEGRA GRQDGKSYKF FTQLEALHSA TTQTANQFVA AVNPMPISSF RVSPSLSTTP  180
SKLPSASTSM PMIPPLDMTK PATHANMTAS TAGIFPTGVI SFSSNSSSSS PSSQDDDDNE  240
DDDLEGEPSN ISRKRKRESW KESSHRMMEF FENLMKQVMQ KQEAMQQKFL EIIEKREEDR  300
MIREEAWKRQ EMTRLSREHE LMAQERAISA SRDAAIISFL QKITGQIIQL PPPAGNNIHH  360
PAPPASAPPP PPPAVPSLTQ QQQQQDKQKH KDQSQCTQQQ QQQQPSAYTD QIAVVVNAEQ  420
HATPQLEFTG GSRINTTTTT TLEATSSSRW PKAEVVALIN LRGGLESRYQ EVGPKGPLWE  480
EISSGMQRMG YKRSAKRCKE KWENINKYFK KIKESNKKRP DDSKTCPYFH QLDALHLKKV  540
NIIGSSSAHA GEQHSISAAK QSQDKGDAET SMAAPNQQPE LVRESENKTA ATTDRVEITS  600
SLGLPSSFFG EGTVVQGASE KKTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896310.10.0trihelix transcription factor GTL1 isoform X3
TrEMBLA0A251P8440.0A0A251P844_PRUPE; Uncharacterized protein
STRINGEMJ115460.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-46Trihelix family protein