PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896340.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26861.7 Da    PI: 5.2372
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.5e-204095156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    r+++ +ft++q++ Le +Fe+++ p   ++++LA +lgL+ rqV +WFqN+Ra+ +
  XP_015896340.1 40 RKNKKRFTDQQIKSLEVMFESDSRPESLTKQQLAGELGLQPRQVAIWFQNKRARSR 95
                    789999************************************************98 PP
2HD-ZIP_I/II104.68e-3442133293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+r++++q+k+LE +Fe++++ e+  K++la eLglqprqva+WFqn+RAR ++kq+E+dy  Lk++y++l+++ e+L++e+++L +++k+
  XP_015896340.1  42 NKKRFTDQQIKSLEVMFESDSRPESLTKQQLAGELGLQPRQVAIWFQNKRARSRAKQIERDYCILKATYQNLASSFESLKAENRTLLTQVKR 133
                     79************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-181698IPR009057Homeodomain-like
SuperFamilySSF466898.77E-182998IPR009057Homeodomain-like
PROSITE profilePS5007117.8313797IPR001356Homeobox domain
SMARTSM003893.0E-1739101IPR001356Homeobox domain
CDDcd000864.01E-144098No hitNo description
PfamPF000462.7E-174095IPR001356Homeobox domain
PRINTSPR000311.5E-56877IPR000047Helix-turn-helix motif
PROSITE patternPS0002707295IPR017970Homeobox, conserved site
PRINTSPR000311.5E-57793IPR000047Helix-turn-helix motif
PfamPF021831.2E-1597137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLAHREQHLP ASAAAALKEE PEDSASHLDL DMHKLTTSIR KNKKRFTDQQ IKSLEVMFES  60
DSRPESLTKQ QLAGELGLQP RQVAIWFQNK RARSRAKQIE RDYCILKATY QNLASSFESL  120
KAENRTLLTQ VKRLKSQQGD HQRIGNSGLN ETENEDDVKF ESKETVSASN NEQSRQYGSR  180
IHEAQFNPSD DMSRNNGENL VEKEADILSV DLCSFESDCF VDESSCSQWW EFWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896340.11e-174homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0D2TCT97e-59A0A0D2TCT9_GOSRA; Uncharacterized protein
STRINGGorai.008G258900.11e-59(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16057910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-36homeobox 7