PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896453.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 362aa    MW: 40382.6 Da    PI: 5.373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++  G g+W+++++  g+ R++k+c++rw++yl
   XP_015896453.1 14 RGLWSPEEDEKLIKYITTNGYGCWSKVPELAGLQRCGKSCRLRWLNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding50.64.3e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +TteE++l+++++   G++ W+ Ia++++ gRt++++k++w+++
   XP_015896453.1  67 RGGFTTEEEKLIINLHGVVGNR-WAHIAKYLP-GRTDNEIKNYWNSW 111
                      788*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.908961IPR017930Myb domain
SuperFamilySSF466893.67E-2912108IPR009057Homeodomain-like
SMARTSM007178.8E-121363IPR001005SANT/Myb domain
PfamPF002492.9E-151461IPR001005SANT/Myb domain
CDDcd001675.29E-111761No hitNo description
PROSITE profilePS5129424.34262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2465116IPR009057Homeodomain-like
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1467111IPR001005SANT/Myb domain
CDDcd001674.33E-1270112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGHHYCCKQR KVKRGLWSPE EDEKLIKYIT TNGYGCWSKV PELAGLQRCG KSCRLRWLNY  60
LRPDIKRGGF TTEEEKLIIN LHGVVGNRWA HIAKYLPGRT DNEIKNYWNS WIKKKIAEKS  120
PSSSSPQGTT STPIVEHNSQ MVGYDSSQPA DFENQDYLLS KPPPPAVRES MFHSSCSSTQ  180
FIFDTSTTAS SRDETNSENN NNNNNNNHMG PELIFQQAMG LNSTGSTWNA LQEQQQVLLQ  240
ALPPSAAPSF TPSNMDMNNY LQPFIQTVEN LVPMELQAAC GIDDDDDGGD QELSEFVHFQ  300
QQQQQQQQQR HNSNSIQFWD NGTGGEPSAA GCGGGDGFTA PCSNNSSNLL SSFPSFYLPP  360
TP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896453.10.0transcription factor MYB86-like
TrEMBLA0A151SV211e-104A0A151SV21_CAJCA; Transcription factor MYB86
STRINGXP_007158529.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-73myb domain protein 103