PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896460.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 211aa    MW: 24030.2 Da    PI: 8.3769
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30118176159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrC +++C+vkk+++r ++d ++v++tYeg Hnh+
  XP_015896460.1 118 LDDGYRWRKYGQKSVKKNNNPRSYYRCCHHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 176
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-31105176IPR003657WRKY domain
SuperFamilySSF1182903.66E-26111177IPR003657WRKY domain
PROSITE profilePS5081128.047113178IPR003657WRKY domain
SMARTSM007747.6E-34118177IPR003657WRKY domain
PfamPF031064.0E-24119176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDEEIQPDLL PSSFIPDITL PLVPSTSMNL LSDPLHQLTQ ESDQIANSDI DWISLLCGST  60
KYDDQNPAPS SPIVSIKAKS ENKGENHGNK NKEKVTRSTK KAIPPRIAFH TRSADDILDD  120
GYRWRKYGQK SVKKNNNPRS YYRCCHHTCN VKKQIQRLSK DSSIVVTTYE GIHNHPCEKL  180
MESLTPLLKQ LQFLSRFQHL EPVHSCHGQQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23106175271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896460.11e-157probable WRKY transcription factor 24
SwissprotQ9FFS32e-56WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A059CHT47e-69A0A059CHT4_EUCGR; Uncharacterized protein
STRINGXP_010053205.11e-69(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.14e-57WRKY DNA-binding protein 24