PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896488.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 364aa    MW: 40377.1 Da    PI: 7.6139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-15260358196
                     EEEE-..-HHH.HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvl.ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k ltpsd+  k++rlvlpkk+ae++   + + ++  l+++d++gr We++++++++ ++  yvl+ G k++    + ++gD+v+F++++  e+
  XP_015896488.1 260 FEKSLTPSDADlKTARLVLPKKCAEACfpRILEGQGLPLVIQDTTGRDWEFNFRFWQNCNSkmYVLE-GIKDYMVFMEWQAGDTVTFYRME-PEG 352
                     89******985166***************555567778****************9777666658888.********************876.788 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +lv++ 
  XP_015896488.1 353 KLVIGT 358
                     888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-24253360IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-17257356IPR015300DNA-binding pseudobarrel domain
CDDcd100173.40E-18258356No hitNo description
PfamPF023623.2E-12260358IPR003340B3 DNA binding domain
SMARTSM010191.2E-12260362IPR003340B3 DNA binding domain
PROSITE profilePS508639.15261362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVVPKIGVSD QMMEFLCRII FVVSLSLSFS MASSKTKTTY KYTNNCFYCK NETEKFQRGW  60
PLRNGCFAAL CERCGSAYEK GTFCDIFHLD TDGWRDCVTC GKNWHCGCIM SCNEYVTLDF  120
GGISCTRCFK ENVILEPNKH PSSPNATTAV SQKTVDASEV ELSVDSKEVV TGTGSSSVSA  180
LHCTSPCDTT VQPPSPTSLS QVQSAAAQGE VPCDTFVDKQ TSKGDASPQF KLHPRNLPKI  240
RDKKLQKISG NSHSSVIPLF EKSLTPSDAD LKTARLVLPK KCAEACFPRI LEGQGLPLVI  300
QDTTGRDWEF NFRFWQNCNS KMYVLEGIKD YMVFMEWQAG DTVTFYRMEP EGKLVIGTKK  360
ASSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-442383642127B3 domain-containing transcription repressor VAL1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896488.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896488.10.0B3 domain-containing protein Os07g0563300-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1597856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-45HSI2-like 1