PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896668.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 222aa    MW: 24631.7 Da    PI: 5.2222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1860110155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr+  ++g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++ a+ +l+g
  XP_015896668.1  60 PVYRGVRRT-NTGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAMALRG 110
                     68****965.59******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1460110IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2161120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-3161120IPR001471AP2/ERF domain
SMARTSM003802.4E-2861124IPR001471AP2/ERF domain
PROSITE profilePS5103222.0161118IPR001471AP2/ERF domain
CDDcd000184.13E-3062120No hitNo description
PRINTSPR003671.6E-86273IPR001471AP2/ERF domain
PRINTSPR003671.6E-884100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDAHYTHHLD FDFLPPEVGE SSSDSGSARR LNLSDEEVLL ASSNPKRRAG RKKFKETRHP  60
VYRGVRRTNT GKWVCEVREP NKKTRIWLGT FPTAEMAARA HDVAAMALRG RSACLNFADS  120
VWRLPMPASK EAKDIQKAAA EAAEAFRPAE LEKKGSKVSE SAAVGSENSF YMEEEEAMSG  180
LGMPGLLADM AEGMLLPPPY CVENGYIEND MEEDADVSLW SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14591171271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896668.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896668.11e-164dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ932e-73DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2P5C9S51e-100A0A2P5C9S5_TREOI; AP2/ERF domain containing protein
TrEMBLA0A2P5D9F61e-100A0A2P5D9F6_PARAD; AP2/ERF domain containing protein
STRINGPOPTR_0012s13870.14e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.14e-55dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]