PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896949.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 305aa    MW: 34120.1 Da    PI: 9.6661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-082468345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a + + ++   +W+++a++++ g+t  +++  + 
   XP_015896949.1 24 KWTPAENKLFENALAVFDKDtpdRWHKVAEMIP-GKTVGDVIKQYK 68
                     8********************************.****99988775 PP
2Myb_DNA-binding48.22.5e-15131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_015896949.1 131 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 175
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-41969IPR009057Homeodomain-like
PROSITE profilePS512939.7362073IPR017884SANT domain
SMARTSM007173.1E-92173IPR001005SANT/Myb domain
SuperFamilySSF466896.79E-122378IPR009057Homeodomain-like
CDDcd001671.33E-72470No hitNo description
PfamPF002491.1E-62468IPR001005SANT/Myb domain
PROSITE profilePS5129420.955124180IPR017930Myb domain
SuperFamilySSF466895.46E-17126179IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-18127179IPR006447Myb domain, plants
SMARTSM007172.7E-13128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-13128175IPR009057Homeodomain-like
CDDcd001671.34E-11131176No hitNo description
PfamPF002495.4E-13131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAILSPASYF SNSNWLFEES KNTKWTPAEN KLFENALAVF DKDTPDRWHK VAEMIPGKTV  60
GDVIKQYKEL EDDVSNIEAG LIPIPGYTTS TFTLDWVNSH GFDGLKQPYA IGGKRSSSNR  120
PADQERKKGV PWTEEEHKLF LMGLKKYGKG DWRNISRNFV VTRTPTQVAS HAQKYFIRQL  180
SGGKDKRRAS IHDITTVNLN DTRTPSPDSK GPPSPDQSSL LCQQSNSASI PRRSFQWIQP  240
SSGGGANMGF NPTNGNIFVS NPYGINSYGI KIEGQNLHRG AVHDSYFGHQ NMVFQMQAAQ  300
HYPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1525901176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896949.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-150DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A061GWE31e-180A0A061GWE3_THECC; DIV1A protein
STRINGEOY338010.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-107MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]