PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896992.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 561aa    MW: 61952.5 Da    PI: 6.8914
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-1559105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ede l  av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
   XP_015896992.1  59 KGGWTPQEDETLRTAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                      688*****************************.************986 PP
2Myb_DNA-binding62.67.8e-20111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++v ++G+  W++Ia+ ++ gR +kqc++rw+++l
   XP_015896992.1 111 KGPWTQEEDDKIVELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP
3Myb_DNA-binding54.42.9e-17163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_015896992.1 163 KDAWTLEEELALMNAHRTHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.75854105IPR017930Myb domain
SMARTSM007177.8E-1458107IPR001005SANT/Myb domain
PfamPF002491.5E-1459105IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-1460115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2161117IPR009057Homeodomain-like
CDDcd001674.68E-1262105No hitNo description
PROSITE profilePS5129433.439106161IPR017930Myb domain
SuperFamilySSF466895.5E-32108204IPR009057Homeodomain-like
SMARTSM007171.9E-18110159IPR001005SANT/Myb domain
PfamPF002496.7E-19111157IPR001005SANT/Myb domain
CDDcd001672.46E-16113157No hitNo description
Gene3DG3DSA:1.10.10.601.4E-27118164IPR009057Homeodomain-like
SMARTSM007172.8E-16162210IPR001005SANT/Myb domain
PROSITE profilePS5129422.208162212IPR017930Myb domain
PfamPF002491.3E-15163206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-23165212IPR009057Homeodomain-like
CDDcd001671.77E-12165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MAEEKLEECC LENKQSTAAS SSSVSEGSGS AILKSPGICS PASTSPTHRR TSGPIRRAKG  60
GWTPQEDETL RTAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIVELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPE IKKDAWTLEE ELALMNAHRT  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVAKSSPQ NGPKDTDTYQ  240
LEEDGQDQLE SSAPPHDMGA SSSVHQNESA DSEGVECKPG TSSMDPSCSN SESIPKCKNY  300
GINSKHKIEN STIDIGPKSD IFGINSKPMF ENFGFAGKIN EDRIIGSPFP FETPIEGSLY  360
YEPPRFEDSD ISDTHFLQQE YNSSPFLSPV GFFTPPCVKS NGSRMPSPES FLKKAAMSFP  420
NTPSILRKRK IKAKVPFSPS KIEKADGESV RDVCHSFNEH EIEVMDMCHT SDEQEIEKNS  480
CEMPCSQDGN LCASPSCNGN STIGPNGKGF NASPPYRLRS KRTAVIKSVE KQLALKFDKE  540
CDGKGSSVAE DCSHATKMEV T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896992.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896992.10.0transcription factor MYB3R-3 isoform X2
SwissprotQ6R0321e-159MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2N9HV100.0A0A2N9HV10_FAGSY; Uncharacterized protein
STRINGEMJ096420.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-150myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]