PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897287.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 315aa    MW: 35731.3 Da    PI: 6.907
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.93.2e-21130190259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg +WrKYGqK + ++++pr+Y+rC ++   gC+++k+v+r + +p +  ++Y g+H++e
  XP_015897287.1 130 NDGQAWRKYGQKAILNAKYPRHYFRCEYKndqGCKATKQVQRIQMNPPLYRTIYYGHHTCE 190
                     8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-22118191IPR003657WRKY domain
PROSITE profilePS5081119.038124187IPR003657WRKY domain
SuperFamilySSF1182906.02E-22124190IPR003657WRKY domain
SMARTSM007743.6E-32129191IPR003657WRKY domain
PfamPF031062.0E-22130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDGSWPENLD AIRKMAIEEL MKGRELANQL RCVLSKSDDS AGSVKNLLMK IMKSFSTTLS  60
ILNVKSSVIS QTQADFQVGL PCLVARNSED SQESCKSNTI TIPSKKNRRG CYERRTSLRT  120
WKRDTPTLIN DGQAWRKYGQ KAILNAKYPR HYFRCEYKND QGCKATKQVQ RIQMNPPLYR  180
TIYYGHHTCE DLKNPEMILE CNTSTNPTEN TSSIFISFDT SSLTNLKNVQ HHPFFSSIKQ  240
ECKEEKTSCD NEDHNQPPSL SSSDYFVSPD LMAAAGSPEQ PMKVLPSTQD FDHEGLVSGM  300
MEYVGLDLDD LHVEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-19129189868OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897287.10.0probable WRKY transcription factor 64
TrEMBLA0A2P5CHL31e-78A0A2P5CHL3_PARAD; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-33WRKY DNA-binding protein 70