PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897289.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 316aa    MW: 36421.8 Da    PI: 5.9867
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY651.3e-20132192259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg +WrKYGqK+++++++ r+Y+rC ++   gC+++k+++r++e+p +  +tY g+H+++
  XP_015897289.1 132 DDGQQWRKYGQKVIRNAKYLRHYFRCPYKydqGCKATKQIQRTQENPPLYRTTYIGHHTCK 192
                     8**************************999999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-22123193IPR003657WRKY domain
PROSITE profilePS5081119.393126189IPR003657WRKY domain
SuperFamilySSF1182907.85E-22127192IPR003657WRKY domain
SMARTSM007743.0E-30131193IPR003657WRKY domain
PfamPF031064.1E-21132192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEISSWPENL TTIQKKVNDE LLEGRELAKQ LQTVLASSGG SRSAEDLLMK IVKSFSTTLS  60
ILNVKESDSD FVISQIQPDL TCLDARKSQD HSRESFWRST TTPPTKKLDR RGCYDRRRTG  120
VSSIRDTPTL FDDGQQWRKY GQKVIRNAKY LRHYFRCPYK YDQGCKATKQ IQRTQENPPL  180
YRTTYIGHHT CKNLHQDPEL ILLDYSTSPS ENSIFISFES TNLAIKQDPF PFLSSFSSTK  240
QEFKEDQIIK CDDNLQNQSA SSDNYFMLPD LASSCLSPGS LELLSSNLKF DVGDHVILDR  300
NMDYDDFYLD IFQFEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-21131192869OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897289.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897289.10.0probable WRKY transcription factor 70
TrEMBLA0A2P5CHL32e-74A0A2P5CHL3_PARAD; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-36WRKY DNA-binding protein 70