PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897336.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 319aa    MW: 36005.8 Da    PI: 5.1225
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.63.9e-26136196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ ++++pr+YYrCt++   +C+++k+v+r +e+p+++ +tY+g+H+++
  XP_015897336.1 136 DDGYAWRKYGQKVILNAQYPRNYYRCTHKydqQCQATKQVQRIQEEPQLFRTTYHGHHTCR 196
                     8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26125196IPR003657WRKY domain
PROSITE profilePS5081121.62130193IPR003657WRKY domain
SuperFamilySSF1182901.15E-24131196IPR003657WRKY domain
SMARTSM007741.5E-36135197IPR003657WRKY domain
PfamPF031063.2E-24136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDTTWPEKLA SGRKRVIDEL MEGRELANQL QSVLLSKSDG DGSSSAVSAA EDLVVKIMES  60
FSNTLFILNV NEGDDDVSVS QIQANSHVGS ACLDARKSED SDESCRSISN VKDRRGCYKR  120
RRASPTWKNE TPTLIDDGYA WRKYGQKVIL NAQYPRNYYR CTHKYDQQCQ ATKQVQRIQE  180
EPQLFRTTYH GHHTCRNLRA PELMLDCTNI TTPGNRSSAL ISFDGSNGSL PNKHGQQEHP  240
FLSTFSSIKQ EFKEEEIPCD INHNQSSSSE YFMPHDLKGF ESQRPMAVLS SSLDSDHGDG  300
LSGVMDPVDF DDEILQFEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21135196869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897336.10.0probable WRKY transcription factor 70
TrEMBLA0A2P5CHL31e-104A0A2P5CHL3_PARAD; WRKY domain containing protein
STRINGXP_010098011.11e-104(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-45WRKY DNA-binding protein 70