PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897505.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 360aa    MW: 40137.5 Da    PI: 5.4086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.68.1e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lvd+++++G g+W++ ++  g++R++k+c++rw +yl
   XP_015897505.1 14 KGPWTPEEDEKLVDYINRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding56.18.4e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+ ++++++  lG++ W++Ia +++ gRt++++k++w++yl
   XP_015897505.1  67 RGKFSEEEERIIINLHSVLGNK-WSRIATHLP-GRTDNEIKNFWNTYL 112
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.195961IPR017930Myb domain
SuperFamilySSF466895.64E-3211108IPR009057Homeodomain-like
SMARTSM007179.5E-161363IPR001005SANT/Myb domain
PfamPF002495.6E-181461IPR001005SANT/Myb domain
CDDcd001676.17E-121661No hitNo description
PROSITE profilePS5129428.61262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2765116IPR009057Homeodomain-like
SMARTSM007174.0E-1766114IPR001005SANT/Myb domain
PfamPF002491.6E-1667112IPR001005SANT/Myb domain
CDDcd001671.59E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRPPCCDEN GLKKGPWTPE EDEKLVDYIN RHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEERIIIN LHSVLGNKWS RIATHLPGRT DNEIKNFWNT YLRKKLLKLG  120
IDPETHKPRT DLNHLLNLSQ LLTATQFGNT INTTSPWDNA LKLQADAAQL AKLQLLQNLL  180
QVINTATSST SATATNPQFP FMDQNSSTSI SNLLGSQNFN PILGLLNGTS NNMMNTGAAD  240
FVPQYYEYSN NNGSSQGVID TWGSPELGGG LEYLDGSVKA MADSNSNNDN NGSYEIKPLP  300
ELTSSPSDHS HGTSAGTNRI EESKSDIDHT HESPTSTIFE AWEKLMDDED SETYWKDILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897505.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897505.20.0transcription factor MYB93-like
SwissprotQ9S9Z24e-91MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2N9G0Y91e-130A0A2N9G0Y9_FAGSY; Uncharacterized protein
STRINGGorai.004G183700.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.17e-83myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]